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LOC100160201 alpha-(1,6)-fucosyltransferase [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100160201, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100160201
Gene description
alpha-(1,6)-fucosyltransferase
See related
APHIDBASE:ACYPI001516; EnsemblRapid:LOC100160201
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100160201 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (4998226..5008295)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383668.1 (94032..104073, complement)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene alpha-(1,6)-fucosyltransferase-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 3-like Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene zinc finger protein 98

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->6)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,6)-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    4998226..5008295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008183154.3 → XP_008181376.1  alpha-(1,6)-fucosyltransferase

    UniProtKB/TrEMBL
    A0A8R2H7C1
    Related
    XP_008181376.1, XM_008183154.3
    Conserved Domains (2) summary
    cd11300
    Location:163 → 492
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:500 → 551
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

  2. XM_029486542.1 → XP_029342402.1  alpha-(1,6)-fucosyltransferase

    UniProtKB/TrEMBL
    A0A8R2H7C1
    Related
    XP_029342402.1, XM_029486542.1
    Conserved Domains (2) summary
    cd11300
    Location:163 → 492
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:500 → 551
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

  3. XM_016803085.2 → XP_016658574.1  alpha-(1,6)-fucosyltransferase

    UniProtKB/TrEMBL
    A0A8R2H7C1
    Related
    XP_016658574.1, XM_016803085.2
    Conserved Domains (2) summary
    cd11300
    Location:163 → 492
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:500 → 551
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)
Nucleotide Protein
Heading Accession and Version

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