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LOC100159143 beta-1,4-galactosyltransferase 7 [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100159143, updated on 10-May-2024

Summary

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Gene symbol
LOC100159143
Gene description
beta-1,4-galactosyltransferase 7
See related
APHIDBASE:ACYPI000541; EnsemblRapid:LOC100159143
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Orthologs
fruit fly all
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Genomic context

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See LOC100159143 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (108407126..108409112, complement)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384395.1 (405290..407307)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene protein TRC8 homolog Neighboring gene uncharacterized LOC100572526 Neighboring gene minichromosome maintenance 3 Neighboring gene glycerol-3-phosphate acyltransferase mino

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables xylosylprotein 4-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    108407126..108409112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001944615.5 → XP_001944650.1  beta-1,4-galactosyltransferase 7

    UniProtKB/TrEMBL
    A0A8R2A7L1
    Related
    XP_001944650.1, XM_001944615.5
    Conserved Domains (1) summary
    cl11394
    Location:49 → 268
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials