pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: pomgnt1provided by Xenbase
Official Full Name: protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)provided by Xenbase
Primary source: Xenbase:XB-GENE-959856
See related: Ensembl:ENSXETG00000004370
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (92966627..92990955, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (81321857..81344987)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables acetylglucosaminyltransferase activity	IEA Inferred from Electronic Annotation more info
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables manganese ion binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within eye morphogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein glycosylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in secretory vesicle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

Names: protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase

NP_001121493.1

EC 2.4.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128021.1 → NP_001121493.1 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

See identical proteins and their annotated locations for NP_001121493.1

Status: PROVISIONAL

Source sequence(s)

BC166303

UniProtKB/TrEMBL

B2GUJ2, F7D9W4, F7D9X3

Related

ENSXETP00000009518.4, ENSXETT00000009518.5

Conserved Domains (2) summary

cd02514
Location:297 → 622

GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

cd13937
Location:94 → 241

PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases