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sanbr.L SANT and BTB domain regulator of CSR L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158390, updated on 4-Nov-2024

Summary

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Official Symbol
sanbr.L
Official Full Name
SANT and BTB domain regulator of CSR L homeolog
Primary source
Xenbase:XB-GENE-993257
Locus tag
XELAEV_18026526mg
See related
EnsemblRapid:ENSXLAG00005013527 AllianceGenome:Xenbase:XB-GENE-993257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sanbr; kiaa1841; kiaa1841.L
Summary
Predicted to enable identical protein binding activity. Predicted to act upstream of or within isotype switching. Orthologous to human SANBR (SANT and BTB domain regulator of CSR). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sanbr.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (32694687..32739672, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (31939036..31983721, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene biorientation of chromosomes in cell division protein 1-like 1 Neighboring gene uncharacterized LOC121393626 Neighboring gene coiled-coil domain-containing protein 18 Neighboring gene peroxisomal biogenesis factor 13 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables identical protein binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within isotype switching ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
SANT and BTB domain regulator of class switch recombination; uncharacterized protein KIAA1841 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127834.1 → NP_001121306.1  SANT and BTB domain regulator of class switch recombination

    See identical proteins and their annotated locations for NP_001121306.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124960
    UniProtKB/Swiss-Prot
    Q08AX9
    UniProtKB/TrEMBL
    A0A974CUJ2
    Related
    ENSXLAP00005039912.1, ENSXLAT00005040833.1
    Conserved Domains (2) summary
    pfam04968
    Location:396 → 461
    CHORD; CHORD
    pfam11822
    Location:146 → 448
    DUF3342; Domain of unknown function (DUF3342)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    32694687..32739672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261581.2 → XP_018117070.1  uncharacterized protein KIAA1841 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0VD38, A0A974CUJ2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08AX9.1 GenPept UniProtKB/Swiss-Prot:Q08AX9

Gene LinkOut

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