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nexn.S nexilin F-actin binding protein S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158372, updated on 18-Sep-2024

Summary

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Official Symbol
nexn.S
Official Full Name
nexilin F-actin binding protein S homeolog
Primary source
Xenbase:XB-GENE-866227
Locus tag
XELAEV_18025068mg
See related
EnsemblRapid:ENSXLAG00005013683
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nexn; nexn.L
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Genomic context

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See nexn.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (61060117..61105259, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (54875365..54920505, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108715502 Neighboring gene far upstream element binding protein 1 S homeolog Neighboring gene ubiquitin specific peptidase 33 S homeolog Neighboring gene zinc finger, ZZ-type containing 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial fusion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nexilin F-actin binding protein S homeolog
Names
nexilin (F actin binding protein) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127816.1 → NP_001121288.1  nexilin F-actin binding protein S homeolog

    See identical proteins and their annotated locations for NP_001121288.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124932
    UniProtKB/TrEMBL
    Q08B02
    Related
    ENSXLAP00005040424.1, ENSXLAT00005041347.1
    Conserved Domains (2) summary
    cd00096
    Location:599 → 666
    Ig; Immunoglobulin domain
    pfam07679
    Location:582 → 671
    I-set; Immunoglobulin I-set domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    61060117..61105259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041591119.1 → XP_041447053.1  nexilin F-actin binding protein S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1N0N6
    Conserved Domains (2) summary
    PTZ00121
    Location:16 → 562
    PTZ00121; MAEBL; Provisional
    smart00409
    Location:573 → 655
    IG; Immunoglobulin

  2. XM_018259295.2 → XP_018114784.1  nexilin F-actin binding protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MZ34, A0A974D178
    Related
    ENSXLAP00005040462.1, ENSXLAT00005041385.1
    Conserved Domains (3) summary
    PTZ00121
    Location:28 → 570
    PTZ00121; MAEBL; Provisional
    pfam07679
    Location:646 → 735
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:646 → 648
    Ig; Ig strand A [structural motif]

  3. XM_018259297.2 → XP_018114786.1  nexilin F-actin binding protein S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0V8D7, A0A974D178
    Related
    ENSXLAP00005040436.1, ENSXLAT00005041359.1

  4. XM_041591118.1 → XP_041447052.1  nexilin F-actin binding protein S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MZ34, A0A974D178
    Conserved Domains (3) summary
    PTZ00121
    Location:28 → 570
    PTZ00121; MAEBL; Provisional
    pfam07679
    Location:646 → 735
    I-set; Immunoglobulin I-set domain
    cd00096
    Location:646 → 648
    Ig; Ig strand A [structural motif]

  5. XM_018259296.2 → XP_018114785.1  nexilin F-actin binding protein S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0V4F0, A0A974D178
Nucleotide Protein Strain
Heading Accession and Version

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