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galnt11.L polypeptide N-acetylgalactosaminyltransferase 11 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158361, updated on 4-Nov-2024

Summary

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Official Symbol
galnt11.L
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 11 L homeolog
Primary source
Xenbase:XB-GENE-17335711
Locus tag
XELAEV_18030659mg
See related
EnsemblRapid:ENSXLAG00005026054 AllianceGenome:Xenbase:XB-GENE-17335711
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
galnac-t11
Summary
Predicted to enable Notch binding activity; carbohydrate binding activity; and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to act upstream of or within protein O-linked glycosylation and regulation of Notch signaling pathway. Predicted to be located in Golgi membrane. Orthologous to human GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See galnt11.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (13140301..13163686)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (10699840..10723057)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit L homeolog Neighboring gene uncharacterized LOC121394528 Neighboring gene lysine methyltransferase 2C L homeolog Neighboring gene uncharacterized LOC121394529 Neighboring gene DNA repair protein XRCC2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Polypeptide N-acetylgalactosaminyltransferase 11-like
Names
pp-gantase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127806.1 → NP_001121278.1  Polypeptide N-acetylgalactosaminyltransferase 11-like

    See identical proteins and their annotated locations for NP_001121278.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124895
    UniProtKB/TrEMBL
    A0A974CMM1, Q08B33
    Related
    ENSXLAP00005077397.1, ENSXLAT00005078988.1
    Conserved Domains (4) summary
    cd02510
    Location:146 → 444
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG1215
    Location:139 → 368
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    cd00161
    Location:475 → 598
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:475 → 596
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13140301..13163686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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