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ska3.L spindle and kinetochore associated complex subunit 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158292, updated on 17-Aug-2024

Summary

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Official Symbol
ska3.L
Official Full Name
spindle and kinetochore associated complex subunit 3 L homeolog
Primary source
Xenbase:XB-GENE-994921
Locus tag
XELAEV_18013787mg
See related
EnsemblRapid:ENSXLAG00005000885
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ska3; rama1
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Genomic context

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See ska3.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (167487879..167503317)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (161589700..161605145)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uptake 2 L homeolog Neighboring gene zinc finger, DHHC-type containing 2 L homeolog Neighboring gene Sin3A associated protein 18kDa L homeolog Neighboring gene large tumor suppressor kinase 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within attachment of mitotic spindle microtubules to kinetochore ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromosome segregation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic metaphase chromosome alignment ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mitotic sister chromatid segregation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of microtubule polymerization or depolymerization ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in meiotic spindle ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in mitotic spindle ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of outer kinetochore IEA
Inferred from Electronic Annotation
more info
  
part_of outer kinetochore ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  
located_in spindle microtubule ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
spindle and kinetochore-associated protein 3
Names
Spindle and kinetochore-associated protein RAMA1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127749.1 → NP_001121221.1  spindle and kinetochore-associated protein 3

    See identical proteins and their annotated locations for NP_001121221.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160719
    UniProtKB/Swiss-Prot
    B1H1S4
    UniProtKB/TrEMBL
    A0A974DRD3
    Related
    ENSXLAP00005002646.1, ENSXLAT00005002698.1
    Conserved Domains (1) summary
    cd12957
    Location:3 → 102
    SKA3_N; Spindle and kinetochore-associated protein 3, N-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    167487879..167503317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B1H1S4.1 GenPept UniProtKB/Swiss-Prot:B1H1S4

Gene LinkOut

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