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SPOCK2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [ Sus scrofa (pig) ]

Gene ID: 100158017, updated on 17-Aug-2024

Summary

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Official Symbol
SPOCK2provided by VGNC
Official Full Name
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2provided by VGNC
Primary source
VGNC:VGNC:107362
See related
Ensembl:ENSSSCG00000010283
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 104.3), mixtures (RPKM 29.5) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SPOCK2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (74938164..74968126, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (80896575..80908366, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106506033 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene uncharacterized LOC110256608 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene anaphase promoting complex subunit 16 Neighboring gene DNA damage inducible transcript 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testican-2
Names
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
testican-2 pseudogene
testican-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    74938164..74968126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021073211.1 → XP_020928870.1  testican-2

    UniProtKB/TrEMBL
    A0A287AUK3, A0A4X1T8P8, A0A8D0IG64, A0A8D0LHU9, A0A8D0U0U2, A0A8W4FMM3
    Related
    ENSSSCP00000079564.1, ENSSSCT00000091923.1
    Conserved Domains (4) summary
    smart00280
    Location:147 → 180
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:312 → 376
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:246 → 277
    EFh_SPARC_EC; EF-hand motif [structural motif]
    cl25349
    Location:199 → 310
    EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

  2. XM_021073210.1 → XP_020928869.1  testican-2

    UniProtKB/TrEMBL
    A0A287AUK3, A0A4X1T8P8, A0A8D0IG64, A0A8D0LHU9, A0A8D0U0U2, A0A8W4FMM3
    Related
    ENSSSCP00000047795.3, ENSSSCT00000047219.3
    Conserved Domains (4) summary
    smart00280
    Location:147 → 180
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:312 → 376
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:246 → 277
    EFh_SPARC_EC; EF-hand motif [structural motif]
    cl25349
    Location:199 → 310
    EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
Nucleotide Protein
Heading Accession and Version

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