TMED5 transmembrane p24 trafficking protein 5 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: TMED5provided by VGNC
Official Full Name: transmembrane p24 trafficking protein 5provided by VGNC
Primary source: VGNC:VGNC:94057
See related: Ensembl:ENSSSCG00000040439
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in liver (RPKM 39.6), spleen (RPKM 37.0) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	4	NC_010446.5 (124009825..124027445)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	4	NC_010446.4 (135564674..135581598)

Chromosome 4 - NC_010446.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in Golgi organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in intracellular protein transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in COPII-coated ER to Golgi transport vesicle	IEA Inferred from Electronic Annotation more info	PubMed
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info	PubMed
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
located_in endoplasmic reticulum-Golgi intermediate compartment	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transmembrane emp24 domain-containing protein 5

Names: transmembrane emp24 protein transport domain containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001243695.1 → NP_001230624.1 transmembrane emp24 domain-containing protein 5 precursor

Status: VALIDATED

Source sequence(s)

AY610000

UniProtKB/TrEMBL

A0A287A5G3, A0A4X1TZZ3, A0A4X1U2C1, A0A8D0TNI1, A0A8D1NRM5, F1S533

Related

ENSSSCP00000039205.1, ENSSSCT00000037498.3

Conserved Domains (1) summary

pfam01105
Location:32 → 219

EMP24_GP25L; emp24/gp25L/p24 family/GOLD