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HPSE2 heparanase 2 (inactive) [ Sus scrofa (pig) ]

Gene ID: 100157983, updated on 8-Mar-2024

Summary

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Gene symbol
HPSE2
Gene description
heparanase 2 (inactive)
See related
Ensembl:ENSSSCG00000010535
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See HPSE2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (109764511..110469064, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (119262145..119752959, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 Neighboring gene uncharacterized LOC106508431 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 1 Neighboring gene glutamic-oxaloacetic transaminase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Molecular characterization, expression profiles, and association analysis with hematologic parameters of the porcine HPSE and HPSE2 genes. Tao C, et al. J Appl Genet, 2013 Feb. PMID 23109057
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive heparanase-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    109764511..110469064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072269.1 → XP_020927928.1  inactive heparanase-2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1U6R6, A0A5G2QZ19
    Conserved Domains (1) summary
    pfam03662
    Location:214 → 414
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

  2. XM_021072270.1 → XP_020927929.1  inactive heparanase-2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1U245, A0A4X1U6R6, A0A5G2QZ19, F1S8W7
    Related
    ENSSSCP00000011224.3, ENSSSCT00000011525.5
    Conserved Domains (1) summary
    pfam03662
    Location:208 → 408
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

  3. XM_021072271.1 → XP_020927930.1  inactive heparanase-2 isoform X3

    Conserved Domains (1) summary
    pfam03662
    Location:182 → 382
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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