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DGCR2 DiGeorge syndrome critical region gene 2 [ Sus scrofa (pig) ]

Gene ID: 100157970, updated on 8-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
Ensembl:ENSSSCG00000036280
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 56.5), kidney (RPKM 55.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (50881260..50935603, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (54387656..54443785, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256810 Neighboring gene zinc finger protein 74 Neighboring gene testis specific serine kinase 1 Neighboring gene testis specific serine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD
Names
Integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    50881260..50935603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001929599.7 → XP_001929634.4  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A287BJD6, A0A4X1UUB4
    Related
    ENSSSCP00000056489.2, ENSSSCT00000052634.3
    Conserved Domains (3) summary
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:112 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_021073673.1 → XP_020929332.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A0B8RVY4, A0A287BJD6, A0A480ZXD0, A0A4X1US64, A0A4X1UUB4
    Conserved Domains (3) summary
    smart00214
    Location:271 → 329
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:115 → 267
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_013981509.2 → XP_013836963.1  integral membrane protein DGCR2/IDD isoform X4

    UniProtKB/TrEMBL
    A0A8D1RCR0
    Conserved Domains (3) summary
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:112 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  4. XM_021073674.1 → XP_020929333.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A8D1RCR0
    Conserved Domains (3) summary
    smart00214
    Location:271 → 329
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:115 → 267
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein Strain
Heading Accession and Version

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