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NSDHL NAD(P) dependent steroid dehydrogenase-like [ Sus scrofa (pig) ]

Gene ID: 100157894, updated on 19-Jun-2024

Summary

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Gene symbol
NSDHL
Gene description
NAD(P) dependent steroid dehydrogenase-like
See related
Ensembl:ENSSSCG00000012758
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 45.1), liver (RPKM 33.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NSDHL in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (123906130..123921935)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (141376781..141391919)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene melanoma-associated antigen 8-like Neighboring gene centrin 2 Neighboring gene zinc finger protein 185 with LIM domain Neighboring gene PNMA family member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in steroid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
NP_001161108.1
XP_005674022.1
XP_005674023.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167636.1 → NP_001161108.1  sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating

    See identical proteins and their annotated locations for NP_001161108.1

    Status: PROVISIONAL

    Source sequence(s)
    AB529864
    UniProtKB/TrEMBL
    A0A8D0PJG2, D0G782
    Conserved Domains (2) summary
    cd09813
    Location:28 → 354
    3b-HSD-NSDHL-like_SDR_e; human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs
    pfam01073
    Location:30 → 280
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    123906130..123921935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005673965.3 → XP_005674022.1  sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X1

    See identical proteins and their annotated locations for XP_005674022.1

    UniProtKB/TrEMBL
    A0A4X1TG22, A0A8D0PJG2, A0A8D0QIB0, F1S2D0, K7GMD9
    Related
    ENSSSCP00000046863.2, ENSSSCT00000048661.3
    Conserved Domains (2) summary
    cd09813
    Location:28 → 354
    3b-HSD-NSDHL-like_SDR_e; human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs
    pfam01073
    Location:30 → 280
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family

  2. XM_005673966.3 → XP_005674023.1  sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X1

    See identical proteins and their annotated locations for XP_005674023.1

    UniProtKB/TrEMBL
    A0A4X1TG22, A0A8D0PJG2, A0A8D0QIB0, F1S2D0, K7GMD9
    Related
    ENSSSCP00000052228.1, ENSSSCT00000033571.4
    Conserved Domains (2) summary
    cd09813
    Location:28 → 354
    3b-HSD-NSDHL-like_SDR_e; human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs
    pfam01073
    Location:30 → 280
    3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family
Nucleotide Protein
Heading Accession and Version

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