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CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100157878, updated on 17-Aug-2024

Summary

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Official Symbol
CSGALNACT2provided by VGNC
Official Full Name
chondroitin sulfate N-acetylgalactosaminyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:87036
See related
Ensembl:ENSSSCG00000010200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 5.3), spleen (RPKM 5.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CSGALNACT2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (61372289..61415563)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (66203109..66244883)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene zinc finger protein 248 Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene FXYD domain containing ion transport regulator 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    61372289..61415563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001926417.6 → XP_001926452.3  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D0K2W6, A0A8D0PEI0, F1RG21
    Conserved Domains (2) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  2. XM_021072401.1 → XP_020928060.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A8D1K7I2, A0A8D1M8Z4
    Conserved Domains (2) summary
    cl11394
    Location:140 → 327
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  3. XM_021072399.1 → XP_020928058.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0SSN5
    Conserved Domains (2) summary
    cl11394
    Location:140 → 412
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  4. XM_021072404.1 → XP_020928063.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D1K7I2, A0A8D1M8Z4
    Conserved Domains (2) summary
    cl11394
    Location:140 → 327
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  5. XM_021072402.1 → XP_020928061.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A8D1K7I2, A0A8D1M8Z4
    Conserved Domains (2) summary
    cl11394
    Location:140 → 327
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  6. XM_021072403.1 → XP_020928062.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A8D1K7I2, A0A8D1M8Z4
    Conserved Domains (2) summary
    cl11394
    Location:140 → 327
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  7. XM_021072398.1 → XP_020928057.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D0K2W6, A0A8D0PEI0, F1RG21
    Related
    ENSSSCP00000010876.3, ENSSSCT00000011166.5
    Conserved Domains (2) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  8. XM_021072397.1 → XP_020928056.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D0K2W6, A0A8D0PEI0, F1RG21
    Conserved Domains (2) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family
Nucleotide Protein
Heading Accession and Version

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