TSPAN3 tetraspanin 3 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: TSPAN3provided by VGNC
Official Full Name: tetraspanin 3provided by VGNC
Primary source: VGNC:VGNC:94510
See related: Ensembl:ENSSSCG00000001868
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in ovary (RPKM 134.7), liver (RPKM 129.8) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	7	NC_010449.5 (57162080..57187515, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	7	NC_010449.4 (61897538..61922973, complement)

Chromosome 7 - NC_010449.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in protein localization to plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein maturation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of vascular endothelial growth factor signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tetraspanin-3

Names: transmembrane 4 superfamily member 8

NP_001231125.1

EC 2.7.10.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244196.1 → NP_001231125.1 tetraspanin-3

Status: VALIDATED

Source sequence(s)

AK233032, BP454088, CA779759

UniProtKB/TrEMBL

A0A480TA60, A0A4X1TT86, A0A8D1NIU1, A0A8D1RRR9, F1SJ91

Related

ENSSSCP00000002043.4, ENSSSCT00000002093.5

Conserved Domains (2) summary

cd03163
Location:104 → 210

TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

pfam00335
Location:10 → 237

Tetraspannin; Tetraspanin family