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KERA keratocan [ Sus scrofa (pig) ]

Gene ID: 100157843, updated on 17-Aug-2024

Summary

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Official Symbol
KERAprovided by VGNC
Official Full Name
keratocanprovided by VGNC
Primary source
VGNC:VGNC:89420
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in subcutaneous adipose (RPKM 10.1), psoas major muscle (RPKM 3.0) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See KERA in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (91794317..91802362)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (96273468..96281118)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene decorin Neighboring gene lumican Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene epiphycan

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: keratocan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    91794317..91802362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927128.5 → XP_001927163.3  LOW QUALITY PROTEIN: keratocan

    UniProtKB/TrEMBL
    A0A8D0XHM5, A0A8D1DAR9
    Conserved Domains (2) summary
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]
    cl26018
    Location:16 → 312
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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