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TGS1 trimethylguanosine synthase 1 [ Sus scrofa (pig) ]

Gene ID: 100157730, updated on 17-Aug-2024

Summary

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Official Symbol
TGS1provided by VGNC
Official Full Name
trimethylguanosine synthase 1provided by VGNC
Primary source
VGNC:VGNC:93939
See related
Ensembl:ENSSSCG00000006251
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 6.2), kidney (RPKM 5.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TGS1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (75937489..75969152, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (82879748..82911839, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene ribosomal protein S20 Neighboring gene LYN proto-oncogene, Src family tyrosine kinase Neighboring gene transmembrane protein 68 Neighboring gene uncharacterized LOC110260295 Neighboring gene XK related 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap trimethylguanosine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 7-methylguanosine RNA capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in 7-methylguanosine cap hypermethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: trimethylguanosine synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    75937489..75969152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927876.6 → XP_001927911.2  LOW QUALITY PROTEIN: trimethylguanosine synthase

    UniProtKB/TrEMBL
    A0A4X1SY52
    Related
    ENSSSCP00000024820.2, ENSSSCT00000032365.3
    Conserved Domains (1) summary
    pfam09445
    Location:689 → 841
    Methyltransf_15; RNA cap guanine-N2 methyltransferase
Nucleotide Protein
Heading Accession and Version

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