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EXT1 exostosin glycosyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100157655, updated on 17-Aug-2024

Summary

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Official Symbol
EXT1provided by VGNC
Official Full Name
exostosin glycosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:87846
See related
Ensembl:ENSSSCG00000006009
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 29.2), lung (RPKM 21.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See EXT1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (20645002..20935769)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (21837627..22128132)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene collectin subfamily member 10 Neighboring gene TNF receptor superfamily member 11b Neighboring gene sterile alpha motif domain containing 12 Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene uncharacterized LOC110260232 Neighboring gene uncharacterized LOC110260233 Neighboring gene mediator complex subunit 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1
Names
ER-resident type II transmembrane glycosyltransferase
putative tumour suppressor/hereditary multiple exostoses candidate

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    20645002..20935769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001924980.6 → XP_001925015.2  exostosin-1

    UniProtKB/TrEMBL
    A0A480VNV2, A0A480VSR4, A0A480XEI8, A0A4X1T6H8, A0A8D1GGY4, A0A8D1Y0Y2, F1S274
    Related
    ENSSSCP00000006417.3, ENSSSCT00000006593.5
    Conserved Domains (2) summary
    pfam03016
    Location:110 → 396
    Exostosin; Exostosin family
    pfam09258
    Location:480 → 721
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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