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ZRANB3 zinc finger RANBP2-type containing 3 [ Sus scrofa (pig) ]

Gene ID: 100157618, updated on 17-Aug-2024

Summary

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Official Symbol
ZRANB3provided by VGNC
Official Full Name
zinc finger RANBP2-type containing 3provided by VGNC
Primary source
VGNC:VGNC:96073
See related
Ensembl:ENSSSCG00000015694
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 1.4), ovary (RPKM 1.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ZRANB3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (16414291..16727659)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (19093163..19182218)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene UBX domain protein 4 Neighboring gene R3H domain containing 1 Neighboring gene microRNA mir-128-1 Neighboring gene nuclease-sensitive element-binding protein 1 pseudogene Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene Neighboring gene RAB3 GTPase activating protein catalytic subunit 1 Neighboring gene mitogen-activated protein kinase kinase kinase 19 Neighboring gene cyclin T2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA annealing helicase and endonuclease ZRANB3
Names
zinc finger, RAN-binding domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    16414291..16727659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021075255.1 → XP_020930914.1  DNA annealing helicase and endonuclease ZRANB3 isoform X2

    UniProtKB/TrEMBL
    A0A481A5R6, A0A4X1SUK9
    Conserved Domains (4) summary
    COG0553
    Location:30 → 485
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00085
    Location:1008 → 1046
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    sd00029
    Location:624 → 643
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:623 → 649
    zf-RanBP; Zn-finger in Ran binding protein and others

  2. XM_021075253.1 → XP_020930912.1  DNA annealing helicase and endonuclease ZRANB3 isoform X2

    UniProtKB/TrEMBL
    A0A481A5R6, A0A4X1SUK9
    Related
    ENSSSCP00000016635.5, ENSSSCT00000017094.5
    Conserved Domains (4) summary
    COG0553
    Location:30 → 485
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00085
    Location:1008 → 1046
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    sd00029
    Location:624 → 643
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:623 → 649
    zf-RanBP; Zn-finger in Ran binding protein and others

  3. XM_021075252.1 → XP_020930911.1  DNA annealing helicase and endonuclease ZRANB3 isoform X2

    UniProtKB/TrEMBL
    A0A481A5R6, A0A4X1SUK9
    Related
    ENSSSCP00000041573.1, ENSSSCT00000051536.1
    Conserved Domains (4) summary
    COG0553
    Location:30 → 485
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00085
    Location:1008 → 1046
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    sd00029
    Location:624 → 643
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:623 → 649
    zf-RanBP; Zn-finger in Ran binding protein and others

  4. XM_021075254.1 → XP_020930913.1  DNA annealing helicase and endonuclease ZRANB3 isoform X2

    UniProtKB/TrEMBL
    A0A481A5R6, A0A4X1SUK9
    Conserved Domains (4) summary
    COG0553
    Location:30 → 485
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00085
    Location:1008 → 1046
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    sd00029
    Location:624 → 643
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:623 → 649
    zf-RanBP; Zn-finger in Ran binding protein and others

  5. XM_021075251.1 → XP_020930910.1  DNA annealing helicase and endonuclease ZRANB3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SUK9
    Conserved Domains (4) summary
    COG0553
    Location:38 → 493
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00085
    Location:1016 → 1054
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    sd00029
    Location:632 → 651
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:631 → 657
    zf-RanBP; Zn-finger in Ran binding protein and others
Nucleotide Protein
Heading Accession and Version

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