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GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 [ Sus scrofa (pig) ]

Gene ID: 100157572, updated on 17-Aug-2024

Summary

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Official Symbol
GALNT15provided by VGNC
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 15provided by VGNC
Primary source
VGNC:VGNC:88331
See related
Ensembl:ENSSSCG00000011195
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
GALNTL2
Expression
Biased expression in subcutaneous adipose (RPKM 23.7), ovary (RPKM 3.1) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GALNT15 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (3329824..3371094)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (3520248..3559242)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102164438 Neighboring gene uncharacterized LOC110256513 Neighboring gene oxidoreductase NAD binding domain containing 1 Neighboring gene diphthamide biosynthesis 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
NP_001193376.1
XP_013836843.2
XP_020923935.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206447.1 → NP_001193376.1  polypeptide N-acetylgalactosaminyltransferase 15 precursor

    Status: VALIDATED

    Source sequence(s)
    AEMK02000084, AK351123, EW054906, EW509464, FS644374
    UniProtKB/TrEMBL
    A0A4X1UQ78, A0A8D1E4K7, A0A8D1Y2Z8
    Related
    ENSSSCP00000046913.1, ENSSSCT00000050771.3
    Conserved Domains (4) summary
    cd02510
    Location:190 → 489
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:503 → 626
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:501 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:187 → 413
    Glyco_tranf_2_3; Glycosyltransferase like family 2

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    3329824..3371094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013981389.2 → XP_013836843.2  polypeptide N-acetylgalactosaminyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    F1RS80
    Conserved Domains (1) summary
    cd02510
    Location:190 → 489
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

  2. XM_021068276.1 → XP_020923935.1  polypeptide N-acetylgalactosaminyltransferase 15 isoform X2

    Conserved Domains (2) summary
    pfam00652
    Location:238 → 361
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:1 → 226
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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