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ACSL5 acyl-CoA synthetase long chain family member 5 [ Sus scrofa (pig) ]

Gene ID: 100157521, updated on 17-Aug-2024

Summary

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Official Symbol
ACSL5provided by VGNC
Official Full Name
acyl-CoA synthetase long chain family member 5provided by VGNC
Primary source
VGNC:VGNC:85034
See related
Ensembl:ENSSSCG00000031789
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in liver (RPKM 66.7), lung (RPKM 45.3) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACSL5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (122777135..122828054)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (133689844..133751494)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255180 Neighboring gene uncharacterized LOC110256751 Neighboring gene uncharacterized LOC110256754 Neighboring gene guanylate cyclase 2G-like Neighboring gene tectorin beta Neighboring gene zinc finger DHHC-type palmitoyltransferase 6 Neighboring gene vesicle transport through interaction with t-SNAREs 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 5
NP_001182250.1
XP_013845942.1
XP_013845943.1
XP_020927673.1
XP_020927674.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195321.1 → NP_001182250.1  long-chain-fatty-acid--CoA ligase 5

    See identical proteins and their annotated locations for NP_001182250.1

    Status: PROVISIONAL

    Source sequence(s)
    GU373682
    UniProtKB/TrEMBL
    A0A4X1TBY0, A0A8D1QEN7, D3K5K4
    Related
    ENSSSCP00000021791.4, ENSSSCT00000029660.4
    Conserved Domains (2) summary
    PLN02736
    Location:65 → 678
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    122777135..122828054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072014.1 → XP_020927673.1  long-chain-fatty-acid--CoA ligase 5 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TBY0, A0A8D1QEN7, F1S5J8, I3LCL6
    Related
    ENSSSCP00000022051.1, ENSSSCT00000026254.3
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_013990489.2 → XP_013845943.1  long-chain-fatty-acid--CoA ligase 5 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TBY0, A0A8D1QEN7, F1S5J8, I3LCL6
    Related
    ENSSSCP00000046448.2, ENSSSCT00000039927.3
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_021072015.1 → XP_020927674.1  long-chain-fatty-acid--CoA ligase 5 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TBY0, A0A8D1QEN7, F1S5J8, I3LCL6
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_013990488.2 → XP_013845942.1  long-chain-fatty-acid--CoA ligase 5 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TBY0, A0A8D1QEN7, F1S5J8, I3LCL6
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein
Heading Accession and Version

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