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DNAI3 dynein axonemal intermediate chain 3 [ Sus scrofa (pig) ]

Gene ID: 100157444, updated on 17-Aug-2024

Summary

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Official Symbol
DNAI3provided by VGNC
Official Full Name
dynein axonemal intermediate chain 3provided by VGNC
Primary source
VGNC:VGNC:94934
See related
Ensembl:ENSSSCG00000006950
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
WDR63
Expression
Biased expression in lung (RPKM 6.2), kidney (RPKM 6.2) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DNAI3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (130765580..130826828, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (143402892..143464053)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene chromosome 4 C1orf52 homolog Neighboring gene uncharacterized LOC106505390 Neighboring gene synapse defective Rho GTPase homolog 2 Neighboring gene mucolipin TRP cation channel 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium movement involved in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of inner dynein arm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 63
Names
WD repeat domain 63

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    130765580..130826828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021090350.1 → XP_020946009.1  WD repeat-containing protein 63 isoform X5

    UniProtKB/TrEMBL
    A0A287BHM6, A0A8D0YZR6, A0A8D1DU42
    Related
    ENSSSCP00000055563.2, ENSSSCT00000062030.2

  2. XM_001928466.6 → XP_001928501.1  WD repeat-containing protein 63 isoform X2

    UniProtKB/TrEMBL
    A0A287AYC9, A0A4X1UG82, A0A8D0Q5M9, A0A8D1TBK4
    Related
    ENSSSCP00000049160.1, ENSSSCT00000064526.2
    Conserved Domains (3) summary
    smart00320
    Location:476 → 524
    WD40; WD40 repeats
    COG2319
    Location:366 → 533
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:677 → 721
    7WD40; WD40 repeat [structural motif]

  3. XM_021090352.1 → XP_020946011.1  WD repeat-containing protein 63 isoform X7

    UniProtKB/TrEMBL
    A0A8D0QJS7
    Conserved Domains (2) summary
    COG2319
    Location:378 → 668
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:446 → 488
    7WD40; WD40 repeat [structural motif]

  4. XM_021090349.1 → XP_020946008.1  WD repeat-containing protein 63 isoform X4

    UniProtKB/TrEMBL
    A0A8D0QJS7, A0A8D0VK11

  5. XM_021090348.1 → XP_020946007.1  WD repeat-containing protein 63 isoform X3

    UniProtKB/TrEMBL
    A0A8D0QLY3, A0A8D0VJC2
    Conserved Domains (1) summary
    COG2319
    Location:391 → 754
    WD40; WD40 repeat [General function prediction only]

  6. XM_013981172.2 → XP_013836626.1  WD repeat-containing protein 63 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UGN3, A0A8D1UJI6, A0A8D1YB76
    Conserved Domains (1) summary
    COG2319
    Location:378 → 545
    WD40; WD40 repeat [General function prediction only]

  7. XM_021090347.1 → XP_020946006.1  WD repeat-containing protein 63 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UGN3, A0A8D1UJI6, A0A8D1YB76
    Conserved Domains (1) summary
    COG2319
    Location:378 → 545
    WD40; WD40 repeat [General function prediction only]

  8. XM_021090353.1 → XP_020946012.1  WD repeat-containing protein 63 isoform X8

    Conserved Domains (2) summary
    COG2319
    Location:201 → 357
    WD40; WD40 repeat [General function prediction only]
    cl25732
    Location:628 → 702
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_021090351.1 → XP_020946010.1  WD repeat-containing protein 63 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UGN3
    Conserved Domains (1) summary
    COG2319
    Location:378 → 545
    WD40; WD40 repeat [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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