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SLC4A11 solute carrier family 4 member 11 [ Sus scrofa (pig) ]

Gene ID: 100157069, updated on 17-Aug-2024

Summary

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Official Symbol
SLC4A11provided by VGNC
Official Full Name
solute carrier family 4 member 11provided by VGNC
Primary source
VGNC:VGNC:95808
See related
Ensembl:ENSSSCG00000007157
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
NaBC1
Expression
Biased expression in kidney (RPKM 10.5), mixtures (RPKM 1.4) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See SLC4A11 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (32445360..32458246)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (36837930..36840155, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257419 Neighboring gene dynein axonemal assembly factor 9 Neighboring gene inosine triphosphatase Neighboring gene DDRGK domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables solute:inorganic anion antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium bicarbonate transporter-like protein 11
Names
sodium-coupled borate transporter
solute carrier family 4, sodium borate transporter, member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    32445360..32458246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077564.1 → XP_020933223.1  sodium bicarbonate transporter-like protein 11 isoform X9

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:185 → 264
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:307 → 658
    HCO3_cotransp; HCO3- transporter family

  2. XM_021077567.1 → XP_020933226.1  sodium bicarbonate transporter-like protein 11 isoform X10

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:184 → 263
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:306 → 657
    HCO3_cotransp; HCO3- transporter family

  3. XM_021077570.1 → XP_020933229.1  sodium bicarbonate transporter-like protein 11 isoform X13

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:134 → 213
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:256 → 607
    HCO3_cotransp; HCO3- transporter family

  4. XM_021077572.1 → XP_020933231.1  sodium bicarbonate transporter-like protein 11 isoform X14

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:133 → 212
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:255 → 606
    HCO3_cotransp; HCO3- transporter family

  5. XM_021077575.1 → XP_020933234.1  sodium bicarbonate transporter-like protein 11 isoform X15

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:66 → 145
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:188 → 539
    HCO3_cotransp; HCO3- transporter family

  6. XM_021077561.1 → XP_020933220.1  sodium bicarbonate transporter-like protein 11 isoform X6

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:204 → 283
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:326 → 677
    HCO3_cotransp; HCO3- transporter family

  7. XM_021077562.1 → XP_020933221.1  sodium bicarbonate transporter-like protein 11 isoform X7

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:203 → 282
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:325 → 676
    HCO3_cotransp; HCO3- transporter family

  8. XM_021077568.1 → XP_020933227.1  sodium bicarbonate transporter-like protein 11 isoform X11

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:153 → 232
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:275 → 626
    HCO3_cotransp; HCO3- transporter family

  9. XM_021077569.1 → XP_020933228.1  sodium bicarbonate transporter-like protein 11 isoform X12

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:152 → 231
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:274 → 625
    HCO3_cotransp; HCO3- transporter family

  10. XM_021077576.1 → XP_020933235.1  sodium bicarbonate transporter-like protein 11 isoform X15

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:66 → 145
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:188 → 539
    HCO3_cotransp; HCO3- transporter family

  11. XM_021077563.1 → XP_020933222.1  sodium bicarbonate transporter-like protein 11 isoform X8

    UniProtKB/TrEMBL
    A0A4X1V8P6, A0A4X1V8Q1, A0A5G2QDU4
    Related
    ENSSSCP00000062318.1, ENSSSCT00000071373.1
    Conserved Domains (2) summary
    COG1762
    Location:210 → 287
    PtsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms]
    pfam00955
    Location:325 → 820
    HCO3_cotransp; HCO3- transporter family

  12. XM_021077566.1 → XP_020933225.1  sodium bicarbonate transporter-like protein 11 isoform X9

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:185 → 264
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:307 → 658
    HCO3_cotransp; HCO3- transporter family

  13. XM_021077574.1 → XP_020933233.1  sodium bicarbonate transporter-like protein 11 isoform X14

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:133 → 212
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:255 → 606
    HCO3_cotransp; HCO3- transporter family

  14. XM_021077556.1 → XP_020933215.1  sodium bicarbonate transporter-like protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:261 → 340
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:383 → 734
    HCO3_cotransp; HCO3- transporter family

  15. XM_021077557.1 → XP_020933216.1  sodium bicarbonate transporter-like protein 11 isoform X2

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:260 → 339
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:382 → 733
    HCO3_cotransp; HCO3- transporter family

  16. XM_021077558.1 → XP_020933217.1  sodium bicarbonate transporter-like protein 11 isoform X3

    UniProtKB/TrEMBL
    A0A8D0M1Y6
    Conserved Domains (2) summary
    COG1762
    Location:268 → 345
    PtsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms]
    pfam00955
    Location:383 → 878
    HCO3_cotransp; HCO3- transporter family

  17. XM_021077559.1 → XP_020933218.1  sodium bicarbonate transporter-like protein 11 isoform X4

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:210 → 289
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:332 → 683
    HCO3_cotransp; HCO3- transporter family

  18. XM_021077560.1 → XP_020933219.1  sodium bicarbonate transporter-like protein 11 isoform X5

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:209 → 288
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:331 → 682
    HCO3_cotransp; HCO3- transporter family

  19. XM_021077565.1 → XP_020933224.1  sodium bicarbonate transporter-like protein 11 isoform X9

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:185 → 264
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:307 → 658
    HCO3_cotransp; HCO3- transporter family

  20. XM_021077571.1 → XP_020933230.1  sodium bicarbonate transporter-like protein 11 isoform X13

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:134 → 213
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:256 → 607
    HCO3_cotransp; HCO3- transporter family

  21. XM_021077573.1 → XP_020933232.1  sodium bicarbonate transporter-like protein 11 isoform X14

    UniProtKB/TrEMBL
    A0A8D0ZYD0
    Conserved Domains (2) summary
    cl00163
    Location:133 → 212
    PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
    cl23746
    Location:255 → 606
    HCO3_cotransp; HCO3- transporter family
Nucleotide Protein
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