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MELTF melanotransferrin [ Sus scrofa (pig) ]

Gene ID: 100156949, updated on 17-Aug-2024

Summary

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Official Symbol
MELTFprovided by VGNC
Official Full Name
melanotransferrinprovided by VGNC
Primary source
VGNC:VGNC:90138
See related
Ensembl:ENSSSCG00000011837
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 2.0) and kidney (RPKM 0.4) See more
Orthologs
human mouse all
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Genomic context

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See MELTF in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (133094869..133122092)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (142726198..142753704)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256399 Neighboring gene discs large MAGUK scaffold protein 1 Neighboring gene uncharacterized LOC110256400 Neighboring gene uncharacterized LOC110256401 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Z Neighboring gene nuclear cap binding protein subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
melanotransferrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    133094869..133122092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021070118.1 → XP_020925777.1  melanotransferrin

    UniProtKB/TrEMBL
    A0A4X1TYV3, A0A8D0PI99, A0A8D0RAE0, A0A8D1ED81, A0A8D1G994, F1SQX4
    Related
    ENSSSCP00000012608.3, ENSSSCT00000012949.3
    Conserved Domains (2) summary
    smart00094
    Location:367 → 704
    TR_FER; Transferrin
    cl26270
    Location:23 → 357
    Transferrin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials