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PIGA phosphatidylinositol glycan anchor biosynthesis class A [ Sus scrofa (pig) ]

Gene ID: 100156880, updated on 17-Aug-2024

Summary

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Official Symbol
PIGAprovided by VGNC
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class Aprovided by VGNC
Primary source
VGNC:VGNC:91419
See related
Ensembl:ENSSSCG00000012134
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 4.6), kidney (RPKM 4.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PIGA in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (11871746..11886519, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (12832314..12847100, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 9 Neighboring gene ankyrin repeat and SOCS box containing 11 Neighboring gene vascular endothelial growth factor D Neighboring gene pirin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol N-acetylglucosaminyltransferase subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    11871746..11886519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013985923.2 → XP_013841377.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X3

    UniProtKB/TrEMBL
    A0A4X1US00, K7GL71
    Related
    ENSSSCP00000028600.3, ENSSSCT00000035430.4
    Conserved Domains (2) summary
    COG0438
    Location:5 → 170
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl10013
    Location:5 → 198
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_021079650.1 → XP_020935309.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1

    UniProtKB/TrEMBL
    A0A4X1UWU1, A0A8D0JFQ1, F1SQU5
    Related
    ENSSSCP00000012917.3, ENSSSCT00000013273.5
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT1_PIG-A_like; This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate ...

  3. XM_021079652.1 → XP_020935311.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1

    UniProtKB/TrEMBL
    A0A4X1UWU1, A0A8D0JFQ1, F1SQU5
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT1_PIG-A_like; This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate ...

  4. XM_013985920.2 → XP_013841374.2  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1

    UniProtKB/TrEMBL
    A0A4X1UWU1, A0A8D0JFQ1, F1SQU5
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT1_PIG-A_like; This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate ...

  5. XM_021079651.1 → XP_020935310.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1

    UniProtKB/TrEMBL
    A0A4X1UWU1, A0A8D0JFQ1, F1SQU5
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT1_PIG-A_like; This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate ...

  6. XM_013985922.2 → XP_013841376.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X2

    Conserved Domains (2) summary
    COG0438
    Location:16 → 142
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl10013
    Location:21 → 170
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
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