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GALNT9 polypeptide N-acetylgalactosaminyltransferase 9 [ Sus scrofa (pig) ]

Gene ID: 100156842, updated on 17-Aug-2024

Summary

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Official Symbol
GALNT9provided by VGNC
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 9provided by VGNC
Primary source
VGNC:VGNC:88336
See related
Ensembl:ENSSSCG00000009738
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in mixtures (RPKM 1.0) and spleen (RPKM 0.1) See more
Orthologs
human mouse all
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Genomic context

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See GALNT9 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (23118148..23228530)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (24538381..24613201)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene fibrosin like 1 Neighboring gene uncharacterized LOC110256661 Neighboring gene nucleolar complex associated 4 homolog Neighboring gene DEAD-box helicase 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    23118148..23228530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072816.1 → XP_020928475.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A287AIU3, A0A480KXV7, A0A4X1UQN4, A0A8D1XL88
    Related
    ENSSSCP00000043810.2, ENSSSCT00000039482.2
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_021072817.1 → XP_020928476.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A287AIU3, A0A8D0RUX8, A0A8D1XL88
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cl26069
    Location:463 → 537
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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