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PRMT6 protein arginine methyltransferase 6 [ Sus scrofa (pig) ]

Gene ID: 100156688, updated on 17-Aug-2024

Summary

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Official Symbol
PRMT6provided by VGNC
Official Full Name
protein arginine methyltransferase 6provided by VGNC
Primary source
VGNC:VGNC:91823
See related
Ensembl:ENSSSCG00000006853
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 3.3), kidney (RPKM 1.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PRMT6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (112698865..112710305, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (123465576..123467796, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene vav guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC110260360 Neighboring gene netrin G1 Neighboring gene uncharacterized LOC106510209 Neighboring gene BRISC complex subunit Abro1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-arginine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-arginine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein arginine N-methyltransferase 6
NP_001177112.1
XP_020944234.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190183.1 → NP_001177112.1  protein arginine N-methyltransferase 6

    Status: PROVISIONAL

    Source sequence(s)
    AK234274
    UniProtKB/TrEMBL
    A0A287AW37, A0A8D0WZM3, A0A8D1ZGX4
    Related
    ENSSSCP00000048147.2, ENSSSCT00000007506.4
    Conserved Domains (1) summary
    pfam12847
    Location:82 → 185
    Methyltransf_18; Methyltransferase domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    112698865..112710305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088575.1 → XP_020944234.1  protein arginine N-methyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A287AW37, A0A8D0WZM3, A0A8D1ZGX4
    Conserved Domains (2) summary
    pfam05185
    Location:129 → 404
    PRMT5; PRMT5 arginine-N-methyltransferase
    cl27060
    Location:147 → 219
    PrmA; Ribosomal protein L11 methyltransferase (PrmA)
Nucleotide Protein
Heading Accession and Version

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