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AACS acetoacetyl-CoA synthetase [ Sus scrofa (pig) ]

Gene ID: 100156545, updated on 17-Aug-2024

Summary

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Official Symbol
AACSprovided by VGNC
Official Full Name
acetoacetyl-CoA synthetaseprovided by VGNC
Primary source
VGNC:VGNC:84937
See related
Ensembl:ENSSSCG00000009755
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 25.0), liver (RPKM 17.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AACS in Genome Data Viewer
Location:
chromosome: 14
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (28109845..28169261, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (29816562..29871927, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132B Neighboring gene transmembrane protein 132B-like Neighboring gene BRI3 binding protein Neighboring gene DEAH-box helicase 37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetoacetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetoacetyl-CoA synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    28109845..28169261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072487.1 → XP_020928146.1  acetoacetyl-CoA synthetase

    UniProtKB/TrEMBL
    A0A480Y227, A0A4X1UPZ8, A0A4X1UQ02, A0A8D1A1A6
    Related
    ENSSSCP00000068631.2, ENSSSCT00000079199.2
    Conserved Domains (1) summary
    TIGR01217
    Location:16 → 671
    ac_ac_CoA_syn; acetoacetyl-CoA synthase
Nucleotide Protein
Heading Accession and Version

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