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NEFH neurofilament heavy chain [ Sus scrofa (pig) ]

Gene ID: 100156492, updated on 17-Aug-2024

Summary

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Official Symbol
NEFHprovided by VGNC
Official Full Name
neurofilament heavy chainprovided by VGNC
Primary source
VGNC:VGNC:90669
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
NF-H
Expression
Biased expression in mixtures (RPKM 1.3), lung (RPKM 0.4) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (46559698..46568686)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (49572997..49583859)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene RAS like family 10 member A Neighboring gene adaptor related protein complex 1 subunit beta 1 Neighboring gene uncharacterized LOC106505960 Neighboring gene uncharacterized LOC106505961 Neighboring gene THO complex subunit 5 Neighboring gene nipsnap homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Specific recognition of coiled coils by infrared spectroscopy: analysis of the three structural domains of type III intermediate filament proteins. Heimburg T, et al. Biochemistry, 1996 Feb 6. PMID 8634266

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of postsynaptic intermediate filament cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neurofilament IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: neurofilament heavy polypeptide
Names
200 kDa neurofilament protein
Neurofilament triplet H protein
neurofilament heavy polypeptide

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    46559698..46568686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005670778.3 → XP_005670835.2  LOW QUALITY PROTEIN: neurofilament heavy polypeptide

    Conserved Domains (2) summary
    pfam00038
    Location:92 → 407
    Filament; Intermediate filament protein
    cl26511
    Location:493 → 1056
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P12037.1 GenPept UniProtKB/Swiss-Prot:P12037

Gene LinkOut

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