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ALDH1B1 aldehyde dehydrogenase 1 family member B1 [ Sus scrofa (pig) ]

Gene ID: 100156278, updated on 17-Aug-2024

Summary

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Official Symbol
ALDH1B1provided by VGNC
Official Full Name
aldehyde dehydrogenase 1 family member B1provided by VGNC
Primary source
VGNC:VGNC:97880
See related
Ensembl:ENSSSCG00000005361
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 104.4), mixtures (RPKM 24.6) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See ALDH1B1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (239109814..239114736)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (267164003..267168786)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene uncharacterized LOC110255882 Neighboring gene stimulated by retinoic acid gene 6 protein-like Neighboring gene insulin like growth factor binding protein like 1 Neighboring gene protein FAM92A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aldehyde dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aldehyde dehydrogenase X, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    239109814..239114736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003353586.5 → XP_003353634.1  aldehyde dehydrogenase X, mitochondrial

    UniProtKB/TrEMBL
    A0A8D0WNT0, A0A8D1ZUR1, F1ST54
    Related
    ENSSSCP00000005754.1, ENSSSCT00000005901.4
    Conserved Domains (2) summary
    cd07141
    Location:31 → 511
    ALDH_F1AB_F2_RALDH1; NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like
    PLN02466
    Location:20 → 508
    PLN02466; aldehyde dehydrogenase family 2 member
Nucleotide Protein
Heading Accession and Version

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