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LGALS8 galectin 8 [ Sus scrofa (pig) ]

Gene ID: 100156193, updated on 17-Aug-2024

Summary

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Official Symbol
LGALS8provided by VGNC
Official Full Name
galectin 8provided by VGNC
Primary source
VGNC:VGNC:89697
See related
Ensembl:ENSSSCG00000010146
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 21.4), ovary (RPKM 19.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LGALS8 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (54867014..54892188, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (58845312..58865899, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase Neighboring gene actinin alpha 2 Neighboring gene HEAT repeat containing 1 Neighboring gene EDAR associated death domain Neighboring gene uncharacterized LOC110256688 Neighboring gene endoplasmic reticulum oxidoreductase 1 beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-8
Names
lectin, galactoside-binding, soluble, 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142827.1 → NP_001136299.1  galectin-8

    See identical proteins and their annotated locations for NP_001136299.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ424706
    UniProtKB/TrEMBL
    A0A4X1ULI8, B7U2G8
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    54867014..54892188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021071989.1 → XP_020927648.1  galectin-8 isoform X6

    UniProtKB/TrEMBL
    A0A4X1ULI8, A0A8D0I7H1, A0A8D0Q842, A0A8D0X9B2
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  2. XM_021071983.1 → XP_020927642.1  galectin-8 isoform X2

    UniProtKB/TrEMBL
    A0A287BM50, A0A8D0IEM2, A0A8D1TIH0
    Related
    ENSSSCP00000057574.1, ENSSSCT00000045288.2
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  3. XM_021071993.1 → XP_020927652.1  galectin-8 isoform X8

    UniProtKB/TrEMBL
    A0A287BPW0, A0A287BQ39, A0A8D0IB31, A0A8D0IDU3, A0A8D1PJS7
    Related
    ENSSSCP00000058469.2, ENSSSCT00000065115.3
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  4. XM_021071992.1 → XP_020927651.1  galectin-8 isoform X7

    UniProtKB/TrEMBL
    A0A287BQ39, A0A8D0IB31, A0A8D0Q5H4, F1RGZ0
    Related
    ENSSSCP00000010821.5, ENSSSCT00000011109.5
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  5. XM_021071985.1 → XP_020927644.1  galectin-8 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UJW7, A0A8D1WSI8
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  6. XM_021071986.1 → XP_020927645.1  galectin-8 isoform X4

    UniProtKB/TrEMBL
    A0A8D0IEM2
    Related
    ENSSSCP00000056781.2, ENSSSCT00000048454.2
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  7. XM_021071987.1 → XP_020927646.1  galectin-8 isoform X5

    UniProtKB/TrEMBL
    A0A4X1ULI8, A0A8D1PQ65
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  8. XM_021071980.1 → XP_020927639.1  galectin-8 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UMW3, A0A8D0YZI9
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  9. XM_021071994.1 → XP_020927653.1  galectin-8 isoform X8

    UniProtKB/TrEMBL
    A0A287BPW0, A0A287BQ39, A0A8D0IB31, A0A8D0IDU3, A0A8D1PJS7
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  10. XM_021071988.1 → XP_020927647.1  galectin-8 isoform X5

    UniProtKB/TrEMBL
    A0A4X1ULI8, A0A8D1PQ65
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  11. XM_021071990.1 → XP_020927649.1  galectin-8 isoform X6

    UniProtKB/TrEMBL
    A0A4X1ULI8, A0A8D0I7H1, A0A8D0Q842, A0A8D0X9B2
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  12. XM_021071981.1 → XP_020927640.1  galectin-8 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UMW3, A0A8D0YZI9
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  13. XM_021071991.1 → XP_020927650.1  galectin-8 isoform X6

    UniProtKB/TrEMBL
    A0A4X1ULI8, A0A8D0I7H1, A0A8D0Q842, A0A8D0X9B2
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  14. XM_021071982.1 → XP_020927641.1  galectin-8 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UMW3, A0A8D0YZI9
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  15. XM_021071984.1 → XP_020927643.1  galectin-8 isoform X2

    UniProtKB/TrEMBL
    A0A287BM50, A0A8D0IEM2, A0A8D1TIH0
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin

  16. XM_021071995.1 → XP_020927654.1  galectin-8 isoform X8

    UniProtKB/TrEMBL
    A0A287BPW0, A0A287BQ39, A0A8D0IB31, A0A8D0IDU3, A0A8D1PJS7
    Conserved Domains (1) summary
    smart00908
    Location:24 → 148
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
Heading Accession and Version

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