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ATP6V1E1 ATPase H+ transporting V1 subunit E1 [ Sus scrofa (pig) ]

Gene ID: 100156112, updated on 17-Aug-2024

Summary

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Official Symbol
ATP6V1E1provided by VGNC
Official Full Name
ATPase H+ transporting V1 subunit E1provided by VGNC
Primary source
VGNC:VGNC:101484
See related
Ensembl:ENSSSCG00000054115
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 91.6), subcutaneous adipose (RPKM 79.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ATP6V1E1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (69752644..69772038, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (72025380..72045336, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260860 Neighboring gene CECR2 histone acetyl-lysine reader Neighboring gene BCL2 like 13 Neighboring gene uncharacterized LOC110260761 Neighboring gene BH3 interacting domain death agonist

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit E 1
Names
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    69752644..69772038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126593.6 → XP_003126641.3  V-type proton ATPase subunit E 1

    See identical proteins and their annotated locations for XP_003126641.3

    UniProtKB/TrEMBL
    A0A4X1UEG2, A0A8D1FQ49, A0A8D1UAE3, K9J4U3
    Related
    ENSSSCP00000075303.1, ENSSSCT00000101490.1
    Conserved Domains (2) summary
    COG1390
    Location:9 → 218
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam01991
    Location:18 → 216
    vATP-synt_E; ATP synthase (E/31 kDa) subunit
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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