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PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 [ Sus scrofa (pig) ]

Gene ID: 100155939, updated on 17-Aug-2024

Summary

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Official Symbol
PIP4P1provided by VGNC
Official Full Name
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1provided by VGNC
Primary source
VGNC:VGNC:91456
See related
Ensembl:ENSSSCG00000038172
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
TMEM55B
Expression
Ubiquitous expression in ovary (RPKM 24.2), kidney (RPKM 14.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PIP4P1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (78447323..78451761)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (83475167..83479601)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene ribonuclease A family member 10 (inactive) Neighboring gene purine nucleoside phosphorylase Neighboring gene apurinic/apyrimidinic endodeoxyribonuclease 1 Neighboring gene O-sialoglycoprotein endopeptidase Neighboring gene kelch like family member 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
Names
transmembrane protein 55B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    78447323..78451761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003356721.5 → XP_003356769.1  type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X2

    See identical proteins and their annotated locations for XP_003356769.1

    UniProtKB/TrEMBL
    A0A4X1UVA9
    Conserved Domains (1) summary
    pfam09788
    Location:4 → 270
    Tmemb_55A; Transmembrane protein 55A

  2. XM_001929229.7 → XP_001929264.1  type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X1

    See identical proteins and their annotated locations for XP_001929264.1

    UniProtKB/TrEMBL
    A0A286ZUJ8, A0A4X1UVA9, A0A8D0T2V7
    Related
    ENSSSCP00000035302.1, ENSSSCT00000048630.2
    Conserved Domains (1) summary
    pfam09788
    Location:4 → 277
    Tmemb_55A; Transmembrane protein 55A
Nucleotide Protein
Heading Accession and Version

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