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RXYLT1 ribitol xylosyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100155789, updated on 17-Aug-2024

Summary

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Official Symbol
RXYLT1provided by VGNC
Official Full Name
ribitol xylosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:92531
See related
Ensembl:ENSSSCG00000000462
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
TMEM5
Expression
Ubiquitous expression in ovary (RPKM 9.3), spleen (RPKM 7.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RXYLT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (28247409..28276276)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (31433526..31462220)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260694 Neighboring gene HSBP1 pseudogene 2 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC5-like Neighboring gene uncharacterized LOC106510320 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene SLIT-ROBO Rho GTPase activating protein 1 Neighboring gene uncharacterized LOC110260695

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribitol beta-1,4-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    28247409..28276276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005663949.3 → XP_005664006.1  transmembrane protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A480XUY5, A0A480Y9A6, A0A4X1VY88, A0A8D0VJU8

  2. XM_001926980.6 → XP_001927015.3  transmembrane protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A480XUY5, A0A480Y9A6, A0A4X1VY88, A0A8D0VJU8, A0A8D1Q8A7, F1SKB9
    Related
    ENSSSCP00000000493.3, ENSSSCT00000000500.4

  3. XM_005663950.3 → XP_005664007.1  transmembrane protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A8D0IM03
Nucleotide Protein
Heading Accession and Version

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Research Materials