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HJV hemojuvelin BMP co-receptor [ Sus scrofa (pig) ]

Gene ID: 100155778, updated on 17-Aug-2024

Summary

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Official Symbol
HJVprovided by VGNC
Official Full Name
hemojuvelin BMP co-receptorprovided by VGNC
Primary source
VGNC:VGNC:96735
See related
Ensembl:ENSSSCG00000035429
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
HFE2
Expression
Biased expression in longissimus dorsi muscle (RPKM 105.7), psoas major muscle (RPKM 103.1) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HJV in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (99327989..99332647)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (108970829..108975446)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106510173 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene thioredoxin interacting protein Neighboring gene RNA polymerase III subunit GL Neighboring gene ankyrin repeat domain 34A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables coreceptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hemojuvelin
Names
hemochromatosis type 2 (juvenile)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    99327989..99332647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005663519.3 → XP_005663576.2  hemojuvelin isoform X1

    UniProtKB/TrEMBL
    A0A287AYZ9, A0A4X1SK64, A0A8D0T7K5
    Related
    ENSSSCP00000049111.1, ENSSSCT00000041872.3
    Conserved Domains (2) summary
    pfam06534
    Location:236 → 395
    RGM_C; Repulsive guidance molecule (RGM) C-terminus
    pfam06535
    Location:37 → 231
    RGM_N; Repulsive guidance molecule (RGM) N-terminus

  2. XM_003355210.4 → XP_003355258.1  hemojuvelin isoform X2

    Conserved Domains (2) summary
    pfam06534
    Location:121 → 285
    RGM_C; Repulsive guidance molecule (RGM) C-terminus
    pfam06535
    Location:1 → 116
    RGM_N; Repulsive guidance molecule (RGM) N-terminus

  3. XM_021089931.1 → XP_020945590.1  hemojuvelin isoform X1

    UniProtKB/TrEMBL
    A0A287AYZ9, A0A4X1SK64, A0A8D0T7K5
    Conserved Domains (2) summary
    pfam06534
    Location:236 → 395
    RGM_C; Repulsive guidance molecule (RGM) C-terminus
    pfam06535
    Location:37 → 231
    RGM_N; Repulsive guidance molecule (RGM) N-terminus

  4. XM_013997208.2 → XP_013852662.2  hemojuvelin isoform X1

    UniProtKB/TrEMBL
    A0A287AYZ9, A0A4X1SK64, A0A8D0T7K5
    Conserved Domains (2) summary
    pfam06534
    Location:236 → 395
    RGM_C; Repulsive guidance molecule (RGM) C-terminus
    pfam06535
    Location:37 → 231
    RGM_N; Repulsive guidance molecule (RGM) N-terminus

  5. XM_021089932.1 → XP_020945591.1  hemojuvelin isoform X3

    UniProtKB/TrEMBL
    A0A287BDE7, A0A8D0J9K8, A0A8D1X3Q5
    Related
    ENSSSCP00000069222.1, ENSSSCT00000086875.1
    Conserved Domains (1) summary
    pfam06534
    Location:4 → 163
    RGM_C; Repulsive guidance molecule (RGM) C-terminus

  6. XM_005663521.3 → XP_005663578.1  hemojuvelin isoform X3

    See identical proteins and their annotated locations for XP_005663578.1

    UniProtKB/TrEMBL
    A0A287BDE7, A0A8D0J9K8, A0A8D1X3Q5
    Related
    ENSSSCP00000054545.1, ENSSSCT00000056361.3
    Conserved Domains (1) summary
    pfam06534
    Location:4 → 163
    RGM_C; Repulsive guidance molecule (RGM) C-terminus

  7. XM_021089933.1 → XP_020945592.1  hemojuvelin isoform X3

    UniProtKB/TrEMBL
    A0A287BDE7, A0A8D0J9K8, A0A8D1X3Q5
    Conserved Domains (1) summary
    pfam06534
    Location:4 → 163
    RGM_C; Repulsive guidance molecule (RGM) C-terminus
Nucleotide Protein
Heading Accession and Version

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