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CLK3 CDC like kinase 3 [ Sus scrofa (pig) ]

Gene ID: 100155768, updated on 17-Aug-2024

Summary

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Official Symbol
CLK3provided by VGNC
Official Full Name
CDC like kinase 3provided by VGNC
Primary source
VGNC:VGNC:107129
See related
Ensembl:ENSSSCG00000001904
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.3), spleen (RPKM 6.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLK3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (58895407..58909616, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (63583925..63598457, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 1 subfamily A member 2 Neighboring gene cytochrome P450 family 1 subfamily A member 1 Neighboring gene enhancer of mRNA decapping 3 Neighboring gene uncharacterized LOC110261565 Neighboring gene AT-rich interaction domain 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity protein kinase CLK3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    58895407..58909616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927924.7 → XP_001927959.3  dual specificity protein kinase CLK3 isoform X1

    See identical proteins and their annotated locations for XP_001927959.3

    UniProtKB/TrEMBL
    A0A4X1TKM3, A0A8D0TPX6, F1SIE6
    Related
    ENSSSCP00000075603.1, ENSSSCT00000095486.1
    Conserved Domains (1) summary
    cd14214
    Location:142 → 472
    PKc_CLK3; Catalytic domain of the Dual-specificity protein kinase, CDC-like kinase 3

  2. XM_021099049.1 → XP_020954708.1  dual specificity protein kinase CLK3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TKM3, A0A8D0TPX6, F1SIE6
    Conserved Domains (1) summary
    cd14214
    Location:142 → 472
    PKc_CLK3; Catalytic domain of the Dual-specificity protein kinase, CDC-like kinase 3

  3. XM_021099052.1 → XP_020954711.1  dual specificity protein kinase CLK3 isoform X2

    Conserved Domains (1) summary
    cl21453
    Location:1 → 251
    PKc_like; Protein Kinases, catalytic domain

  4. XM_021099050.1 → XP_020954709.1  dual specificity protein kinase CLK3 isoform X2

    Conserved Domains (1) summary
    cl21453
    Location:1 → 251
    PKc_like; Protein Kinases, catalytic domain

  5. XM_021099051.1 → XP_020954710.1  dual specificity protein kinase CLK3 isoform X2

    Conserved Domains (1) summary
    cl21453
    Location:1 → 251
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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