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PTPRN protein tyrosine phosphatase receptor type N [ Sus scrofa (pig) ]

Gene ID: 100155609, updated on 17-Aug-2024

Summary

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Official Symbol
PTPRNprovided by VGNC
Official Full Name
protein tyrosine phosphatase receptor type Nprovided by VGNC
Primary source
VGNC:VGNC:96523
See related
Ensembl:ENSSSCG00000016218
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in mixtures (RPKM 2.8), spleen (RPKM 0.6) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See PTPRN in Genome Data Viewer
Location:
chromosome: 15
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (121329284..121349228, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (134364686..134384609, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257085 Neighboring gene tubulin alpha-1D chain Neighboring gene DnaJ heat shock protein family (Hsp40) member B2 Neighboring gene regulated endocrine specific protein 18 Neighboring gene mitochondrial fission factor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in secretory granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase-like N

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    121329284..121349228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003133669.4 → XP_003133717.2  LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase-like N

    UniProtKB/TrEMBL
    F1SR78
    Related
    ENSSSCP00000017181.4, ENSSSCT00000017659.5
    Conserved Domains (4) summary
    pfam00102
    Location:734 → 968
    Y_phosphatase; Protein-tyrosine phosphatase
    pfam11548
    Location:469 → 557
    Receptor_IA-2; Protein-tyrosine phosphatase receptor IA-2
    pfam14948
    Location:60 → 138
    RESP18; RESP18 domain
    cl26464
    Location:114 → 472
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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