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SLC39A5 solute carrier family 39 member 5 [ Sus scrofa (pig) ]

Gene ID: 100155542, updated on 17-Aug-2024

Summary

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Official Symbol
SLC39A5provided by VGNC
Official Full Name
solute carrier family 39 member 5provided by VGNC
Primary source
VGNC:VGNC:93106
See related
Ensembl:ENSSSCG00000000385
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in liver (RPKM 31.1), mixtures (RPKM 14.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (21631874..21640476)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (23030339..23036253, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene ring finger protein 41 Neighboring gene nucleic acid binding protein 2 Neighboring gene ankyrin repeat domain 52 Neighboring gene coenzyme Q10A Neighboring gene citrate synthase Neighboring gene canopy FGF signaling regulator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc transporter ZIP5
Names
solute carrier family 39 (metal ion transporter), member 5
solute carrier family 39 (zinc transporter), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    21631874..21640476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655608.3 → XP_005655665.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655665.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Related
    ENSSSCP00000044361.2, ENSSSCT00000046133.3
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  2. XM_005655613.3 → XP_005655670.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655670.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  3. XM_005655607.3 → XP_005655664.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655664.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  4. XM_013988303.2 → XP_013843757.1  zinc transporter ZIP5

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Related
    ENSSSCP00000080997.1, ENSSSCT00000103517.1
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  5. XM_005655612.3 → XP_005655669.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655669.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  6. XM_001927701.5 → XP_001927736.2  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_001927736.2

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Related
    ENSSSCP00000043904.2, ENSSSCT00000037549.3
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  7. XM_005655609.3 → XP_005655666.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655666.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  8. XM_021092859.1 → XP_020948518.1  zinc transporter ZIP5

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  9. XM_003126265.4 → XP_003126313.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_003126313.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Related
    ENSSSCP00000000407.4, ENSSSCT00000000413.4
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  10. XM_021092860.1 → XP_020948519.1  zinc transporter ZIP5

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  11. XM_005655614.3 → XP_005655671.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655671.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter

  12. XM_005655611.3 → XP_005655668.1  zinc transporter ZIP5

    See identical proteins and their annotated locations for XP_005655668.1

    UniProtKB/TrEMBL
    A0A480S7M3, A0A4X1W3N1, A0A4X1WAN6, F1SLZ7
    Conserved Domains (1) summary
    pfam02535
    Location:242 → 505
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version

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