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UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100155117, updated on 17-Aug-2024

Summary

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Official Symbol
UGGT1provided by VGNC
Official Full Name
UDP-glucose glycoprotein glucosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:95646
See related
Ensembl:ENSSSCG00000015857
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 13.5), lung (RPKM 12.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See UGGT1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
41
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (59141582..59265053, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (65884854..65977064, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106506245 Neighboring gene heparan sulfate 6-O-sulfotransferase 1 Neighboring gene Sin3A associated protein 130 Neighboring gene AMMECR1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glucose:glycoprotein glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucose:glycoprotein glucosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    59141582..59265053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021075942.1 → XP_020931601.1  UDP-glucose:glycoprotein glucosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A287B9Y1, A0A4X1VRM2, A0A8D1LN40, A0A8D1RYL4, A0A8D1SVA6, K9J4P3
    Related
    ENSSSCP00000053141.2, ENSSSCT00000049692.2
    Conserved Domains (2) summary
    cd06432
    Location:1249 → 1496
    GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family
    pfam06427
    Location:45 → 1194
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase

  2. XM_021075941.1 → XP_020931600.1  UDP-glucose:glycoprotein glucosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0RIT1, A0A8D1LM82, A0A8D1SHP2, A0A8D1UC68, F1RQJ4
    Related
    ENSSSCP00000016804.4, ENSSSCT00000017266.5
    Conserved Domains (2) summary
    cd06432
    Location:1257 → 1504
    GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family
    pfam06427
    Location:45 → 1202
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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