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DPY19L4 dpy-19 like 4 [ Sus scrofa (pig) ]

Gene ID: 100155024, updated on 17-Aug-2024

Summary

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Official Symbol
DPY19L4provided by VGNC
Official Full Name
dpy-19 like 4provided by VGNC
Primary source
VGNC:VGNC:87427
See related
Ensembl:ENSSSCG00000006098
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 4.4), lung (RPKM 3.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DPY19L4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (41920775..41985819, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (45239090..45299248, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene tumor protein p53 inducible nuclear protein 1 Neighboring gene cyclin E2 Neighboring gene integrator complex subunit 8 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene vir like m6A methyltransferase associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    41920775..41985819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021089085.1 → XP_020944744.1  probable C-mannosyltransferase DPY19L4 isoform X1

    UniProtKB/TrEMBL
    A0A287BSC1, A0A4X1U460, A0A8D1EPA7
    Related
    ENSSSCP00000059072.1, ENSSSCT00000062305.3
    Conserved Domains (1) summary
    pfam10034
    Location:61 → 731
    Dpy19; Q-cell neuroblast polarisation

  2. XM_001926300.6 → XP_001926335.1  probable C-mannosyltransferase DPY19L4 isoform X2

    UniProtKB/TrEMBL
    A0A287BP67, A0A480K1H6, A0A4X1TZ69, A0A8D1EPA7
    Related
    ENSSSCP00000058414.2, ENSSSCT00000058605.3
    Conserved Domains (1) summary
    pfam10034
    Location:61 → 714
    Dpy19; Q-cell neuroblast polarization

  3. XM_005662961.3 → XP_005663018.1  probable C-mannosyltransferase DPY19L4 isoform X3

    UniProtKB/TrEMBL
    A0A287BNB9, A0A8D0TZR9, A0A8D1MJH1
    Related
    ENSSSCP00000058008.3, ENSSSCT00000047479.3
    Conserved Domains (1) summary
    pfam10034
    Location:61 → 672
    Dpy19; Q-cell neuroblast polarization

  4. XM_021089086.1 → XP_020944745.1  probable C-mannosyltransferase DPY19L4 isoform X4

    UniProtKB/TrEMBL
    A0A8D1ICR0
    Conserved Domains (1) summary
    pfam10034
    Location:1 → 626
    Dpy19; Q-cell neuroblast polarisation

RNA

  1. XR_002343212.1 RNA Sequence

  2. XR_002343210.1 RNA Sequence

  3. XR_002343211.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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