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PIGP phosphatidylinositol glycan anchor biosynthesis class P [ Sus scrofa (pig) ]

Gene ID: 100154885, updated on 17-Aug-2024

Summary

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Official Symbol
PIGPprovided by VGNC
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class Pprovided by VGNC
Primary source
VGNC:VGNC:91427
See related
Ensembl:ENSSSCG00000012061
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 27.1), kidney (RPKM 22.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PIGP in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (200686716..200695537, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (210760413..210769136, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene holocarboxylase synthetase Neighboring gene uncharacterized LOC110256485 Neighboring gene ripply transcriptional repressor 3 Neighboring gene tetratricopeptide repeat domain 3 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene VPS26 endosomal protein sorting factor C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Fahrenkrug SC, et al. Mamm Genome, 2002 Aug. PMID 12226715
  2. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol N-acetylglucosaminyltransferase subunit P
NP_001230449.1
NP_001230450.1
NP_001230451.1
XP_020923890.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243520.1 → NP_001230449.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit P

    See identical proteins and their annotated locations for NP_001230449.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK344057, FD597318
    UniProtKB/TrEMBL
    A0A287B1D6, A0A4X1TPU0, A0A8D0MJD4
    Related
    ENSSSCP00000049910.1, ENSSSCT00000044360.1
    Conserved Domains (1) summary
    pfam08510
    Location:11 → 124
    PIG-P; PIG-P

  2. NM_001243521.1 → NP_001230450.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit P

    See identical proteins and their annotated locations for NP_001230450.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK344057, BM484478
    UniProtKB/TrEMBL
    A0A287B1D6, A0A4X1TPU0, A0A8D0MJD4
    Conserved Domains (1) summary
    pfam08510
    Location:11 → 124
    PIG-P; PIG-P

  3. NM_001243522.1 → NP_001230451.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit P

    See identical proteins and their annotated locations for NP_001230451.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK344057, EW470448
    UniProtKB/TrEMBL
    A0A287B1D6, A0A4X1TPU0, A0A8D0MJD4
    Conserved Domains (1) summary
    pfam08510
    Location:11 → 124
    PIG-P; PIG-P

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    200686716..200695537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068231.1 → XP_020923890.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit P isoform X1

    UniProtKB/TrEMBL
    A0A287B1D6, A0A4X1TPU0, A0A8D0MJD4
    Conserved Domains (1) summary
    pfam08510
    Location:11 → 124
    PIG-P; PIG-P
Nucleotide Protein Strain
Heading Accession and Version

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