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FAM8A1 family with sequence similarity 8 member A1 [ Sus scrofa (pig) ]

Gene ID: 100154793, updated on 17-Aug-2024

Summary

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Official Symbol
FAM8A1provided by VGNC
Official Full Name
family with sequence similarity 8 member A1provided by VGNC
Primary source
VGNC:VGNC:87996
See related
Ensembl:ENSSSCG00000001070
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 16.7), ovary (RPKM 15.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See FAM8A1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (13378129..13390895)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (14080235..14092970)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene cyclase associated actin cytoskeleton regulatory protein 2 Neighboring gene 40S ribosomal protein SA-like Neighboring gene nucleoporin 153 Neighboring gene 60S ribosomal protein L35a pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein FAM8A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    13378129..13390895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100215.1 → XP_020955874.1  protein FAM8A1 isoform X2

    Conserved Domains (1) summary
    cl26464
    Location:5 → 213
    Atrophin-1; Atrophin-1 family

  2. XM_003128189.4 → XP_003128237.2  protein FAM8A1 isoform X1

    UniProtKB/TrEMBL
    A0A480ZRL8, A0A4X1VN37, A0A8D1J031
    Related
    ENSSSCP00000072465.1, ENSSSCT00000086870.1
    Conserved Domains (2) summary
    pfam06271
    Location:246 → 405
    RDD; RDD family
    cl26464
    Location:5 → 213
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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