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UBOX5 U-box domain containing 5 [ Sus scrofa (pig) ]

Gene ID: 100154685, updated on 17-Aug-2024

Summary

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Official Symbol
UBOX5provided by VGNC
Official Full Name
U-box domain containing 5provided by VGNC
Primary source
VGNC:VGNC:95860
See related
Ensembl:ENSSSCG00000007162
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 7.9), kidney (RPKM 5.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See UBOX5 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (32520612..32561534)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (36890602..36930993)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene DDRGK domain containing 1 Neighboring gene leucine zipper tumor suppressor family member 3 Neighboring gene FAST kinase domains 5 Neighboring gene uncharacterized LOC110257451 Neighboring gene uncharacterized LOC100526084 Neighboring gene vasopressin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-ubiquitin ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RING finger protein 37

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    32520612..32561534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001925847.5 → XP_001925882.2  RING finger protein 37 isoform X1

    UniProtKB/TrEMBL
    A0A287BLI6, A0A8D1ZVM8
    Related
    ENSSSCP00000056934.1, ENSSSCT00000050369.3
    Conserved Domains (2) summary
    cd16537
    Location:482 → 528
    RING-HC_RNF37; RING finger, HC subclass, found in RING finger protein 37 (RNF37)
    cd16660
    Location:260 → 312
    RING-Ubox_RNF37; U-box domain, a modified RING finger, found in RING finger protein 37 (RNF37)

  2. XM_005672784.3 → XP_005672841.2  RING finger protein 37 isoform X2

    UniProtKB/TrEMBL
    A0A8D0M0I4
    Conserved Domains (1) summary
    cd16660
    Location:260 → 312
    RING-Ubox_RNF37; U-box domain, a modified RING finger, found in RING finger protein 37 (RNF37)
Nucleotide Protein
Heading Accession and Version

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