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WDR3 WD repeat domain 3 [ Sus scrofa (pig) ]

Gene ID: 100154556, updated on 17-Aug-2024

Summary

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Official Symbol
WDR3provided by VGNC
Official Full Name
WD repeat domain 3provided by VGNC
Primary source
VGNC:VGNC:94913
See related
Ensembl:ENSSSCG00000006727
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 40.0), spleen (RPKM 10.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See WDR3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
27
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (102841459..102878636, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (112790944..112841022, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260334 Neighboring gene sperm associated antigen 17 Neighboring gene uncharacterized LOC100155374 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene uncharacterized LOC106510178

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    102841459..102878636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021089971.1 → XP_020945630.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A480YVN7, A0A8D1EXV1, A0A8D1KPT2, F1SAY9
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_021089970.1 → XP_020945629.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A480YVN7, A0A8D1EXV1, A0A8D1KPT2, F1SAY9
    Related
    ENSSSCP00000007174.3, ENSSSCT00000007369.4
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl25539
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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