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RPL8 ribosomal protein L8 [ Sus scrofa (pig) ]

Gene ID: 100154456, updated on 17-Aug-2024

Summary

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Official Symbol
RPL8provided by VGNC
Official Full Name
ribosomal protein L8provided by VGNC
Primary source
VGNC:VGNC:106458
See related
Ensembl:ENSSSCG00000029830
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1307.6), spleen (RPKM 1167.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RPL8 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (136105..138651, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (206963..209523)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene zinc finger protein 250 Neighboring gene zinc finger protein 34 Neighboring gene uncharacterized LOC110260418 Neighboring gene zinc finger protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    136105..138651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655297.3 → XP_005655354.1  60S ribosomal protein L8

    See identical proteins and their annotated locations for XP_005655354.1

    UniProtKB/TrEMBL
    A0A0B8S017, A0A480VEZ3, A0A4X1UQ84, F2Z567, K7GNM9
    Related
    ENSSSCP00000020790.1, ENSSSCT00000031015.4
    Conserved Domains (1) summary
    cl40667
    Location:1 → 254
    RplB; Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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