U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CFAP43 cilia and flagella associated protein 43 [ Sus scrofa (pig) ]

Gene ID: 100154215, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
CFAP43provided by VGNC
Official Full Name
cilia and flagella associated protein 43provided by VGNC
Primary source
VGNC:VGNC:107376
See related
Ensembl:ENSSSCG00000010609
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
WDR96
Expression
Biased expression in lung (RPKM 1.7), ovary (RPKM 0.8) and 3 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CFAP43 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
44
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (115073529..115201965, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (124990707..125052816, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene STE20 like kinase Neighboring gene collagen type XVII alpha 1 chain Neighboring gene SWI5 dependent homologous recombination repair protein 1 Neighboring gene uncharacterized LOC100623931 Neighboring gene glutathione S-transferase omega 1 Neighboring gene glutathione S-transferase omega 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cilia- and flagella-associated protein 43
Names
WD repeat domain 96

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    115073529..115201965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072818.1 → XP_020928477.1  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TIZ5, A0A5G2QY67
    Conserved Domains (4) summary
    COG2319
    Location:301 → 504
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:350 → 387
    7WD40; WD40 repeat [structural motif]
    cl25732
    Location:914 → 1659
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1096 → 1302
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_021072821.1 → XP_020928480.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A4X1TIZ5, A0A5G2QY67
    Conserved Domains (4) summary
    COG2319
    Location:231 → 434
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:280 → 317
    7WD40; WD40 repeat [structural motif]
    cl25732
    Location:844 → 1589
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1026 → 1232
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_021072820.1 → XP_020928479.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A4X1TIZ5, A0A5G2QY67
    Conserved Domains (4) summary
    COG2319
    Location:231 → 434
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:280 → 317
    7WD40; WD40 repeat [structural motif]
    cl25732
    Location:844 → 1589
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1026 → 1232
    Neuromodulin_N; Gap junction protein N-terminal region

  4. XM_021072819.1 → XP_020928478.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A4X1TIZ5, A0A5G2QY67
    Conserved Domains (4) summary
    COG2319
    Location:231 → 434
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:280 → 317
    7WD40; WD40 repeat [structural motif]
    cl25732
    Location:844 → 1589
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1026 → 1232
    Neuromodulin_N; Gap junction protein N-terminal region

  5. XM_013983708.2 → XP_013839162.2  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A4X1TIZ5, A0A5G2QY67
    Related
    ENSSSCP00000063153.2, ENSSSCT00000090212.2
    Conserved Domains (4) summary
    COG2319
    Location:301 → 504
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:350 → 387
    7WD40; WD40 repeat [structural motif]
    cl25732
    Location:913 → 1658
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:1095 → 1301
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.