U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

M6PR mannose-6-phosphate receptor, cation dependent [ Sus scrofa (pig) ]

Gene ID: 100154117, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
M6PRprovided by VGNC
Official Full Name
mannose-6-phosphate receptor, cation dependentprovided by VGNC
Primary source
VGNC:VGNC:89931
See related
Ensembl:ENSSSCG00000040743
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 38.0), lung (RPKM 35.7) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See M6PR in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (62537751..62557674)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (65378685..65390302, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene alpha-2-macroglobulin Neighboring gene killer cell lectin like receptor G1 Neighboring gene zinc finger protein ZFPM1-like Neighboring gene polyhomeotic homolog 1 Neighboring gene alpha-2-macroglobulin like 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cation-dependent mannose-6-phosphate receptor
Names
insulin-like growth factor 2 receptor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    62537751..62557674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092380.1 → XP_020948039.1  cation-dependent mannose-6-phosphate receptor

    UniProtKB/TrEMBL
    A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
    Conserved Domains (1) summary
    cl26634
    Location:1 → 278
    ATG27; Autophagy-related protein 27

  2. XM_001927611.5 → XP_001927646.1  cation-dependent mannose-6-phosphate receptor

    See identical proteins and their annotated locations for XP_001927646.1

    UniProtKB/TrEMBL
    A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
    Related
    ENSSSCP00000000703.4, ENSSSCT00000000718.5
    Conserved Domains (1) summary
    cl26634
    Location:1 → 278
    ATG27; Autophagy-related protein 27

  3. XM_021092377.1 → XP_020948036.1  cation-dependent mannose-6-phosphate receptor

    UniProtKB/TrEMBL
    A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
    Related
    ENSSSCP00000055753.1, ENSSSCT00000050474.2
    Conserved Domains (1) summary
    cl26634
    Location:1 → 278
    ATG27; Autophagy-related protein 27

  4. XM_021092378.1 → XP_020948037.1  cation-dependent mannose-6-phosphate receptor

    UniProtKB/TrEMBL
    A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
    Conserved Domains (1) summary
    cl26634
    Location:1 → 278
    ATG27; Autophagy-related protein 27

  5. XM_021092379.1 → XP_020948038.1  cation-dependent mannose-6-phosphate receptor

    UniProtKB/TrEMBL
    A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
    Conserved Domains (1) summary
    cl26634
    Location:1 → 278
    ATG27; Autophagy-related protein 27
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.