U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TIGAR TP53 induced glycolysis regulatory phosphatase [ Sus scrofa (pig) ]

Gene ID: 100154112, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TIGARprovided by VGNC
Official Full Name
TP53 induced glycolysis regulatory phosphataseprovided by VGNC
Primary source
VGNC:VGNC:93980
See related
Ensembl:ENSSSCG00000024219
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C5H12orf5
Expression
Ubiquitous expression in heart (RPKM 14.0), spleen (RPKM 9.6) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TIGAR in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (66044679..66067571, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (68266609..68289947, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 6 Neighboring gene fibroblast growth factor 23 Neighboring gene uncharacterized LOC106507534 Neighboring gene cyclin D2 Neighboring gene uncharacterized LOC106510360

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fructose-2,6-bisphosphate 2-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 1,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fructose 2,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of programmed cell death IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
fructose-2,6-bisphosphatase TIGAR

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    66044679..66067571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655710.3 → XP_005655767.1  fructose-2,6-bisphosphatase TIGAR isoform X2

    See identical proteins and their annotated locations for XP_005655767.1

    UniProtKB/TrEMBL
    A0A4X1UQ65, A0A8D1WGY0, F1SKZ0
    Related
    ENSSSCP00000021128.2, ENSSSCT00000028356.3
    Conserved Domains (1) summary
    pfam00300
    Location:6 → 210
    His_Phos_1; Histidine phosphatase superfamily (branch 1)

  2. XM_021092447.1 → XP_020948106.1  fructose-2,6-bisphosphatase TIGAR isoform X1

    UniProtKB/TrEMBL
    A0A8D1WGY0
    Conserved Domains (1) summary
    cl11399
    Location:7 → 159
    HP; Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

RNA

  1. XR_002344132.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.