HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: HOGA1provided by VGNC
Official Full Name: 4-hydroxy-2-oxoglutarate aldolase 1provided by VGNC
Primary source: VGNC:VGNC:88927
See related: Ensembl:ENSSSCG00000010523
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: DHDPSL
Expression: Biased expression in kidney (RPKM 126.7), mixtures (RPKM 35.2) and 2 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	14	NC_010456.5 (108958812..108986373)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	14	NC_010456.4 (118462772..118490341)

Chromosome 14 - NC_010456.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables N-acetylneuraminate lyase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in N-acetylneuraminate catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: 4-hydroxy-2-oxoglutarate aldolase, mitochondrial

Names: dihydrodipicolinate synthase-like, mitochondrial

NP_001177098.1

EC 4.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001190169.1 → NP_001177098.1 4-hydroxy-2-oxoglutarate aldolase, mitochondrial

Status: PROVISIONAL

Source sequence(s)

AK236562

UniProtKB/TrEMBL

A0A4X1UAM4, A0A8D0TM74, A0A8D0WBW8

Related

ENSSSCP00000011212.4, ENSSSCT00000011513.5

Conserved Domains (1) summary

cd00408
Location:38 → 318

DHDPS-like; Dihydrodipicolinate synthase family