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FDPS farnesyl diphosphate synthase [ Sus scrofa (pig) ]

Gene ID: 100153932, updated on 17-Aug-2024

Summary

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Official Symbol
FDPSprovided by VGNC
Official Full Name
farnesyl diphosphate synthaseprovided by VGNC
Primary source
VGNC:VGNC:88077
See related
Ensembl:ENSSSCG00000006512
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 61.8), ovary (RPKM 41.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (94500140..94514820, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (103291797..103304940, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene cyclin-C-like Neighboring gene RUN and SH3 domain containing 1 Neighboring gene uncharacterized LOC102165794 Neighboring gene pyruvate kinase L/R Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene CDC like kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase
Names
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
NP_001172060.1
XP_005663367.1
XP_020944215.1
XP_020944216.1
XP_020944218.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001185131.1 → NP_001172060.1  farnesyl pyrophosphate synthase precursor

    See identical proteins and their annotated locations for NP_001172060.1

    Status: PROVISIONAL

    Source sequence(s)
    AB529527
    UniProtKB/TrEMBL
    A0A481DNJ7, A0A4X1VZX0, A0A8D0UAX3, A0A8D1M691, D0G6X4
    Related
    ENSSSCP00000006940.2, ENSSSCT00000007132.5
    Conserved Domains (1) summary
    pfam00348
    Location:110 → 375
    polyprenyl_synt; Polyprenyl synthetase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    94500140..94514820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005663310.3 → XP_005663367.1  farnesyl pyrophosphate synthase isoform X4

    See identical proteins and their annotated locations for XP_005663367.1

    UniProtKB/TrEMBL
    A0A287AWX3, A0A5G2QST4, A0A8D0ZYT5, A0A8D1M6M7
    Related
    ENSSSCP00000048368.2, ENSSSCT00000065093.3
    Conserved Domains (1) summary
    pfam00348
    Location:50 → 311
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_021088557.1 → XP_020944216.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A481DNJ7, A0A4X1VZX0, A0A8D0UAX3, A0A8D1M691, D0G6X4
    Conserved Domains (1) summary
    pfam00348
    Location:110 → 375
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_021088556.1 → XP_020944215.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A481DNJ7, A0A8D0UAX3
    Conserved Domains (1) summary
    pfam00348
    Location:110 → 408
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_021088559.1 → XP_020944218.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A5G2QST4, A0A8D0ZYT5, A0A8D1M6M7
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 340
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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