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ACSS2 acyl-CoA synthetase short chain family member 2 [ Sus scrofa (pig) ]

Gene ID: 100153866, updated on 17-Aug-2024

Summary

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Official Symbol
ACSS2provided by VGNC
Official Full Name
acyl-CoA synthetase short chain family member 2provided by VGNC
Primary source
VGNC:VGNC:95665
See related
Ensembl:ENSSSCG00000007286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 42.8), subcutaneous adipose (RPKM 33.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACSS2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (38260152..38315764)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (43455051..43510660)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene nuclear receptor coactivator 6 Neighboring gene gamma-glutamyltransferase 7 Neighboring gene uncharacterized LOC106506661 Neighboring gene glutathione synthetase Neighboring gene myosin heavy chain 7B Neighboring gene microRNA mir-499

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-coenzyme A synthetase, cytoplasmic
NP_001137167.1
XP_005672919.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143695.1 → NP_001137167.1  acetyl-coenzyme A synthetase, cytoplasmic

    See identical proteins and their annotated locations for NP_001137167.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ458420
    UniProtKB/TrEMBL
    A0A480Y097, A0A4X1T7K0, B8XY19
    Related
    ENSSSCP00000007758.2, ENSSSCT00000007971.4
    Conserved Domains (2) summary
    cd05966
    Location:51 → 685
    ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
    PRK00174
    Location:31 → 692
    PRK00174; acetyl-CoA synthetase; Provisional

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    38260152..38315764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005672862.3 → XP_005672919.1  acetyl-coenzyme A synthetase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A287BEZ5, A0A4X1T712, A0A8D0W3U9, A0A8D1H621
    Related
    ENSSSCP00000055106.1, ENSSSCT00000048008.3
    Conserved Domains (2) summary
    cd05966
    Location:51 → 698
    ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
    PRK00174
    Location:31 → 705
    PRK00174; acetyl-CoA synthetase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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